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 Turkey said Friday that it was expelling the Israeli ambassador and suspending military agreements with Israel, signaling a deepening rift between the former strategic allies in the aftermath of last year’s deadly Israeli raid on a Turkish ship leading an aid flotilla to Gaza.

The crisis with Turkey comes as Israel faces strained relations with another longtime regional ally, Egypt, over a deadly border incident last month, and it raises the prospect of Israel’s increasing isolation in the region at a time of tumultuous change.